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Automated Chemical Identification System for Accelerated R&D Processes
  1. case
  2. Automated Chemical Identification System for Accelerated R&D Processes

Automated Chemical Identification System for Accelerated R&D Processes

netguru.com
Medical
Manufacturing

Challenges in manual chemical identification and data enrichment in scientific literature

The client faces significant delays—taking approximately 6 months—manual effort required by domain experts to identify, name, and catalog chemical compounds from scientific literature and existing databases, hampering R&D efficiency and timely decision-making.

About the Client

A large, global pharmaceutical or biotech company seeking to streamline chemical research and identification workflows to accelerate drug development and product innovation.

Objectives for streamlining chemical data extraction and cataloging

  • Reduce the chemical identification process from 6 months to under 24 hours.
  • Develop an AI-powered interface allowing experts to upload scientific literature in PDF format for automated processing.
  • Extract chemical compounds including their names, identifiers (InchiKey, CAS, Smiles code), molecular formulas, and synonyms.
  • Enrich internal chemical databases with comprehensive chemical property data for each identified compound.
  • Cross-reference identified chemicals with existing sales or catalog data to determine current availability.
  • Deliver a secure, enterprise-compliant solution hosted on the client's infrastructure.

Core functionalities for automated chemical data extraction and catalog enrichment

  • Secure user interface for uploading scientific literature (PDF files).
  • AI-driven extraction pipeline utilizing large language model frameworks to identify chemical mentions.
  • Chunking mechanism to handle large data inputs exceeding language model limitations.
  • Integration with chemical databases to retrieve properties like InchiKey, CAS, Smiles, molecular formulas, and synonyms.
  • Automated cross-referencing with internal catalogs to identify existing chemicals in the inventory.
  • Visualization tools displaying chemical information alongside 2D molecular structure images.
  • Secure storage compliant with enterprise data security standards.
  • Logging, tracking, and documentation of extraction processes for auditing.

Technology stack preferences for AI-powered chemical data extraction

Large Language Model frameworks (e.g., AzureOpenAI, similar GPT endpoints)
LangChain or equivalent tools for constructing LLM-powered applications
Cloud infrastructure aligned with enterprise security policies (e.g., Azure, AWS, or private cloud)
Databases for chemical properties and catalog data enrichment
APIs for external chemical databases

Essential system integrations for comprehensive chemical data processing

  • External chemical databases for property retrieval (InchiKey, CAS, Smiles, etc.)
  • Internal catalog databases for existing chemical inventory checks
  • Enterprise authentication and authorization systems
  • Secure file storage and transfer mechanisms

Critical non-functional system requirements for enterprise-grade deployment

  • High scalability to process large volumes of literature and chemical data
  • Performance: Chemical identification and data retrieval within 24 hours of upload
  • Enterprise-grade security and compliance standards
  • Data integrity and auditability of extraction and enrichment processes
  • Hosted within the client’s secure infrastructure

Projected benefits and business impact of the chemical identification automation system

The implementation of this AI-driven chemical identification system is expected to drastically reduce manual processing time from months to less than a day, significantly accelerating R&D workflows. This will enhance decision-making speed, improve data accuracy and consistency, and support faster product development cycles, ultimately leading to increased innovation and competitive advantage.

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