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Development of a Modular Clinical Data Exploration Framework for Accelerated Trial Analysis
  1. case
  2. Development of a Modular Clinical Data Exploration Framework for Accelerated Trial Analysis

Development of a Modular Clinical Data Exploration Framework for Accelerated Trial Analysis

appsilon.com
Medical

Clinical Data Analysis Challenges in Pharmaceutical Research

The client faces difficulties in efficiently analyzing large, complex clinical datasets, including high manual effort in generating tables, listings, and graphs (TLGs), delays in dashboard creation for Medical Data Reviews (MDR), and maintaining software code quality amidst frequent team changes. These challenges hinder rapid decision-making and reduce reproducibility in clinical trial analysis.

About the Client

A mid-to-large pharmaceutical research organization seeking to streamline clinical trial data analysis and reporting processes using advanced data exploration tools.

Goals for Enhancing Clinical Data Exploration and Reporting

  • Develop a modular, open-source framework for interactive clinical data exploration that reduces analysis time from months to weeks.
  • Create a comprehensive set of core packages to automate generation of TLGs and MDR dashboards, facilitating faster insights.
  • Refactor existing codebase to minimize technical debt, improve maintainability, and prepare for a stable 1.0 release on public repositories.
  • Support onboarding of new data analysts through well-structured, high-quality code and documentation.
  • Enable over 30 concurrent study teams to leverage the framework for their analyses, improving reproducibility and consistency.
  • Automate and standardize reporting processes to save hundreds of hours annually across multiple clinical studies.

Core Functional Capabilities of the Data Exploration Framework

  • Modular architecture allowing easy addition and customization of analysis components.
  • Built-in interactive data filtering and subset selection panels.
  • Predefined analysis modules for common statistical and visualization tasks.
  • Automated generation of tables, listings, and graphical reports (TLGs).
  • Support for creation of standardized MDR dashboards for clinical review.
  • Comprehensive logging and reporting with robust error handling.
  • User onboarding and support tools for rapid adoption.

Technology Stack Preferences for Development

Open-source R packages and frameworks, particularly leveraging Shiny for interactivity
CI/CD pipelines for continuous integration and deployment
Version control systems for collaborative development
Flexible modular architecture for maintainability

External Systems and Data Integration Needs

  • Integration with CDISC datasets and standards for seamless data import
  • Connectivity to clinical data repositories and data warehouses
  • Tools for automated report publishing and dashboard deployment
  • Possible integration with existing clinical trial management systems

Essential Non-Functional System Attributes

  • Scalability to handle large, complex datasets across multiple simultaneous studies
  • High performance with minimal response times for interactive analysis
  • Security and data privacy compliance for sensitive clinical data
  • Code quality and maintainability to support long-term project sustainability
  • User friendly interface to support diverse user expertise levels

Anticipated Business Benefits and Outcomes

The implementation of this modular clinical data exploration framework is expected to reduce development and analysis time significantly—accelerating insights from several months to weeks, enabling over 30 study teams to conduct faster and more reproducible analyses. It will automate extensive reporting tasks, potentially saving hundreds of hours annually, and improve decision-making speed during clinical trials. Overall, it will enhance analytical consistency, reduce technical debt, and support the organization’s strategic goal of a stable, maintainable, open-source clinical analysis platform.

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